@ Ontology Change Report @ First ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/150/fypo.obo @ Second ontology URI: file:///srv/ncbo/share/env/prod/repository/FYPO/149/fypo.obo @ File Written at 2013.11.11 at 08:43:57 PST @ Number of classes changed: 19 @ Number of classes added: 2 @Classes modified from previous --- Class Changed: http://www.geneontology.org/go#FYPO_0002819 label: increased histone H3-K9 acetylation at telomere - SubClassOf('increased histone H3-K9 acetylation at telomere' 'increased histone H3-K9 acetylation') - SubClassOf('increased histone H3-K9 acetylation at telomere' ObjectSomeValueFrom('occurs_at' 'telomere')) - SubClassOf('increased histone H3-K9 acetylation at telomere' ObjectSomeValueFrom('inheres_in' 'histone H3-K9 acetylation')) - SubClassOf('increased histone H3-K9 acetylation at telomere' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('increased histone H3-K9 acetylation at telomere' ObjectSomeValueFrom('qualifier' PATO_0002051)) - EquivalentClasses('increased histone H3-K9 acetylation at telomere' ObjectIntersectionOf(ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'histone H3-K9 acetylation') ObjectSomeValueFrom('occurs_at' 'telomere') ObjectSomeValueFrom('qualifier' PATO_0002051)) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002722 label: phytochelatin absent from cell - SubClassOf('phytochelatin absent from cell' 'decreased cellular phytochelatin level') --- Class Changed: http://www.geneontology.org/go#FYPO_0002824 label: abnormal protein localization to mitotic spindle - SubClassOf('abnormal protein localization to mitotic spindle' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('abnormal protein localization to mitotic spindle' ObjectSomeValueFrom('qualifier' PATO_0000460)) - SubClassOf('abnormal protein localization to mitotic spindle' ObjectSomeValueFrom('inheres_in' GO_1902480)) - SubClassOf('abnormal protein localization to mitotic spindle' 'abnormal protein localization during vegetative growth') - EquivalentClasses('abnormal protein localization to mitotic spindle' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' GO_1902480) ObjectSomeValueFrom('qualifier' PATO_0000460)) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002830 label: delayed protein phosphorylation during vegetative growth - SubClassOf('delayed protein phosphorylation during vegetative growth' 'delayed protein modification') - SubClassOf('delayed protein phosphorylation during vegetative growth' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('delayed protein phosphorylation during vegetative growth' 'abnormal protein phosphorylation during vegetative growth') - EquivalentClasses('delayed protein phosphorylation during vegetative growth' ObjectIntersectionOf(PATO_0000502 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein phosphorylation')) ) - SubClassOf('delayed protein phosphorylation during vegetative growth' ObjectSomeValueFrom('inheres_in' 'protein phosphorylation')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002646 label: decreased protein serine phosphorylation during mitotic M phase - SubClassOf('decreased protein serine phosphorylation during mitotic M phase' 'decreased protein phosphorylation during mitotic M phase') --- Class Changed: http://www.geneontology.org/go#FYPO_0002823 label: abolished protein localization to mitotic spindle pole body during interphase - SubClassOf('abolished protein localization to mitotic spindle pole body during interphase' 'abolished protein localization to mitotic spindle pole body') - SubClassOf('abolished protein localization to mitotic spindle pole body during interphase' ObjectSomeValueFrom('during' 'mitotic interphase')) - SubClassOf('abolished protein localization to mitotic spindle pole body during interphase' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - SubClassOf('abolished protein localization to mitotic spindle pole body during interphase' ObjectSomeValueFrom('towards' 'protein localization to mitotic spindle pole body')) - EquivalentClasses('abolished protein localization to mitotic spindle pole body during interphase' ObjectIntersectionOf(PATO_0001558 ObjectSomeValueFrom('during' 'mitotic interphase') ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'protein localization to mitotic spindle pole body')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002829 label: decreased cellular phytochelatin level - SubClassOf('decreased cellular phytochelatin level' ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)')) - SubClassOf('decreased cellular phytochelatin level' ObjectSomeValueFrom('towards' 'phytochelatin')) - EquivalentClasses('decreased cellular phytochelatin level' ObjectIntersectionOf(PATO_0001163 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'vegetative cell (sensu Fungi)') ObjectSomeValueFrom('towards' 'phytochelatin')) ) - SubClassOf('decreased cellular phytochelatin level' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) - SubClassOf('decreased cellular phytochelatin level' 'decreased level of substance in cell during vegetative growth') --- Class Changed: http://www.geneontology.org/go#FYPO_0002820 label: abolished histone H3-K9 methylation at telomere - EquivalentClasses('abolished histone H3-K9 methylation at telomere' ObjectIntersectionOf(PATO_0001558 ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('occurs_at' 'telomere') ObjectSomeValueFrom('towards' 'histone H3-K9 methylation')) ) - SubClassOf('abolished histone H3-K9 methylation at telomere' ObjectSomeValueFrom('occurs_at' 'telomere')) - SubClassOf('abolished histone H3-K9 methylation at telomere' ObjectSomeValueFrom('towards' 'histone H3-K9 methylation')) - SubClassOf('abolished histone H3-K9 methylation at telomere' ObjectSomeValueFrom('during' 'single-celled organism vegetative growth phase')) - SubClassOf('abolished histone H3-K9 methylation at telomere' 'abolished histone H3-K9 methylation') --- Class Changed: http://www.geneontology.org/go#FYPO_0002818 label: microtubule bundles present in decreased numbers - SubClassOf('microtubule bundles present in decreased numbers' 'abnormal microtubule cytoskeleton') - EquivalentClasses('microtubule bundles present in decreased numbers' ObjectIntersectionOf(PATO_0002001 ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('towards' 'microtubule bundle')) ) - SubClassOf('microtubule bundles present in decreased numbers' PATO_0002001) - SubClassOf('microtubule bundles present in decreased numbers' ObjectSomeValueFrom('towards' 'microtubule bundle')) - SubClassOf('microtubule bundles present in decreased numbers' 'abnormal subcellular component during vegetative growth') - SubClassOf('microtubule bundles present in decreased numbers' ObjectSomeValueFrom('exists_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002828 label: constitutive protein kinase activity - SubClassOf('constitutive protein kinase activity' 'constitutive catalytic activity') --- Class Changed: http://www.geneontology.org/go#FYPO_0002826 label: normal gamma-tubulin complex assembly - SubClassOf('normal gamma-tubulin complex assembly' ObjectSomeValueFrom('inheres_in' GO_1902481)) - SubClassOf('normal gamma-tubulin complex assembly' ObjectSomeValueFrom('qualifier' PATO_0000461)) - SubClassOf('normal gamma-tubulin complex assembly' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('normal gamma-tubulin complex assembly' 'normal protein complex assembly') - EquivalentClasses('normal gamma-tubulin complex assembly' ObjectIntersectionOf(PATO_0000001 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' GO_1902481) ObjectSomeValueFrom('qualifier' PATO_0000461)) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002833 label: decreased polyuridylation-dependent decapping of nuclear-transcribed mRNA - SubClassOf('decreased polyuridylation-dependent decapping of nuclear-transcribed mRNA' 'decreased deadenylation-independent decapping of nuclear-transcribed mRNA') - EquivalentClasses('decreased polyuridylation-dependent decapping of nuclear-transcribed mRNA' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' GO_0036450)) ) - SubClassOf('decreased polyuridylation-dependent decapping of nuclear-transcribed mRNA' ObjectSomeValueFrom('inheres_in' GO_0036450)) - SubClassOf('decreased polyuridylation-dependent decapping of nuclear-transcribed mRNA' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002825 label: decreased protein localization to mitotic spindle - EquivalentClasses('decreased protein localization to mitotic spindle' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' GO_1902480)) ) - SubClassOf('decreased protein localization to mitotic spindle' ObjectSomeValueFrom('inheres_in' GO_1902480)) - SubClassOf('decreased protein localization to mitotic spindle' 'abnormal protein localization to mitotic spindle') - SubClassOf('decreased protein localization to mitotic spindle' PATO_0002052) - SubClassOf('decreased protein localization to mitotic spindle' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002831 label: delayed protein phosphorylation during mitotic M phase - SubClassOf('delayed protein phosphorylation during mitotic M phase' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('delayed protein phosphorylation during mitotic M phase' ObjectIntersectionOf(PATO_0000502 ObjectSomeValueFrom('happens_during' 'mitotic M phase') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein phosphorylation')) ) - SubClassOf('delayed protein phosphorylation during mitotic M phase' ObjectSomeValueFrom('happens_during' 'mitotic M phase')) - SubClassOf('delayed protein phosphorylation during mitotic M phase' 'delayed protein phosphorylation during vegetative growth') - SubClassOf('delayed protein phosphorylation during mitotic M phase' ObjectSomeValueFrom('inheres_in' 'protein phosphorylation')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002827 label: decreased chromatin silencing at silent mating-type cassette - SubClassOf('decreased chromatin silencing at silent mating-type cassette' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - EquivalentClasses('decreased chromatin silencing at silent mating-type cassette' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'chromatin silencing at silent mating-type cassette')) ) - SubClassOf('decreased chromatin silencing at silent mating-type cassette' 'abnormal chromatin silencing at silent mating-type cassette') - SubClassOf('decreased chromatin silencing at silent mating-type cassette' 'decreased chromatin silencing') - SubClassOf('decreased chromatin silencing at silent mating-type cassette' ObjectSomeValueFrom('inheres_in' 'chromatin silencing at silent mating-type cassette')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002822 label: decreased protein localization to mitotic spindle pole body during mitosis - SubClassOf('decreased protein localization to mitotic spindle pole body during mitosis' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('decreased protein localization to mitotic spindle pole body during mitosis' ObjectSomeValueFrom('inheres_in' 'protein localization to mitotic spindle pole body')) - SubClassOf('decreased protein localization to mitotic spindle pole body during mitosis' ObjectSomeValueFrom('happens_during' 'mitosis')) - EquivalentClasses('decreased protein localization to mitotic spindle pole body during mitosis' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'mitosis') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to mitotic spindle pole body')) ) - SubClassOf('decreased protein localization to mitotic spindle pole body during mitosis' 'decreased protein localization to mitotic spindle pole body') --- Class Changed: http://www.geneontology.org/go#FYPO_0002821 label: decreased protein localization to mitotic spindle pole body during interphase - SubClassOf('decreased protein localization to mitotic spindle pole body during interphase' ObjectSomeValueFrom('inheres_in' 'protein localization to mitotic spindle pole body')) - SubClassOf('decreased protein localization to mitotic spindle pole body during interphase' 'decreased protein localization to mitotic spindle pole body') - SubClassOf('decreased protein localization to mitotic spindle pole body during interphase' ObjectSomeValueFrom('happens_during' 'mitotic interphase')) - EquivalentClasses('decreased protein localization to mitotic spindle pole body during interphase' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'mitotic interphase') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein localization to mitotic spindle pole body')) ) - SubClassOf('decreased protein localization to mitotic spindle pole body during interphase' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) --- Class Changed: http://www.geneontology.org/go#FYPO_0002832 label: decreased protein phosphorylation during mitotic M phase - SubClassOf('decreased protein phosphorylation during mitotic M phase' ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase')) - SubClassOf('decreased protein phosphorylation during mitotic M phase' 'decreased protein phosphorylation during vegetative growth') - SubClassOf('decreased protein phosphorylation during mitotic M phase' ObjectSomeValueFrom('happens_during' 'mitotic M phase')) - SubClassOf('decreased protein phosphorylation during mitotic M phase' ObjectSomeValueFrom('inheres_in' 'protein phosphorylation')) - EquivalentClasses('decreased protein phosphorylation during mitotic M phase' ObjectIntersectionOf(PATO_0002052 ObjectSomeValueFrom('happens_during' 'mitotic M phase') ObjectSomeValueFrom('happens_during' 'single-celled organism vegetative growth phase') ObjectSomeValueFrom('inheres_in' 'protein phosphorylation')) ) --- Class Changed: http://www.geneontology.org/go#FYPO_0002647 label: decreased protein threonine phosphorylation during mitotic M phase - SubClassOf('decreased protein threonine phosphorylation during mitotic M phase' 'decreased protein phosphorylation during mitotic M phase') @New Classes --- !New Class!: http://www.geneontology.org/go#FYPO_0001161 label: decreased aerobic cell population growth on glucose carbon source + SubClassOf('decreased aerobic cell population growth on glucose carbon source' 'decreased cell population growth on glucose carbon source') --- !New Class!: http://www.geneontology.org/go#FYPO_0001163 label: decreased hypoxic cell population growth on glucose carbon source + SubClassOf('decreased hypoxic cell population growth on glucose carbon source' 'decreased cell population growth on glucose carbon source')